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What is a quick way to find the reverse complement in bash

What is the fastest way to get the reverse complement of a DNA sequence in python?How to get the product of a CDSTool to show DNA sequence and allowing upload of own graph dataDe novo motif discovery in protein sequencesSort vcf by contig and position within contigHow to use extractfeat?Filter reads belonging to unique sequences with threshold

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3

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I have a DNA sequence of which I would like to quickly find the reverse complement. Is there a quick way of doing this on the bash command line using only GNU tools?

sequence-analysis dna bash

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asked Apr 15 at 9:46

winni2kwinni2k

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3

$begingroup$

I have a DNA sequence of which I would like to quickly find the reverse complement. Is there a quick way of doing this on the bash command line using only GNU tools?

sequence-analysis dna bash

share|improve this question

asked Apr 15 at 9:46

winni2kwinni2k

1,27022 silver badges2020 bronze badges

$endgroup$

add a comment
 | 

$begingroup$

I have a DNA sequence of which I would like to quickly find the reverse complement. Is there a quick way of doing this on the bash command line using only GNU tools?

sequence-analysis dna bash

share|improve this question

asked Apr 15 at 9:46

winni2kwinni2k

1,27022 silver badges2020 bronze badges

$endgroup$

share|improve this question

asked Apr 15 at 9:46

winni2kwinni2k

1,27022 silver badges2020 bronze badges

share|improve this question

asked Apr 15 at 9:46

winni2kwinni2k

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asked Apr 15 at 9:46

winni2kwinni2k

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asked Apr 15 at 9:46

winni2kwinni2k

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1 Answer
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9

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Thanks to Manu Tamminen for this solution:

echo ACCTTGAAA | tr ACGTacgt TGCAtgca | rev

share|improve this answer

edited Apr 15 at 14:03

Chris_Rands

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answered Apr 15 at 9:46

winni2kwinni2k

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9

$begingroup$

Thanks to Manu Tamminen for this solution:

echo ACCTTGAAA | tr ACGTacgt TGCAtgca | rev

share|improve this answer

edited Apr 15 at 14:03

Chris_Rands

1,68944 silver badges1919 bronze badges

answered Apr 15 at 9:46

winni2kwinni2k

1,27022 silver badges2020 bronze badges

$endgroup$

add a comment
 | 

9

$begingroup$

Thanks to Manu Tamminen for this solution:

echo ACCTTGAAA | tr ACGTacgt TGCAtgca | rev

share|improve this answer

edited Apr 15 at 14:03

Chris_Rands

1,68944 silver badges1919 bronze badges

answered Apr 15 at 9:46

winni2kwinni2k

1,27022 silver badges2020 bronze badges

$endgroup$

add a comment
 | 

$begingroup$

Thanks to Manu Tamminen for this solution:

echo ACCTTGAAA | tr ACGTacgt TGCAtgca | rev

share|improve this answer

edited Apr 15 at 14:03

Chris_Rands

1,68944 silver badges1919 bronze badges

answered Apr 15 at 9:46

winni2kwinni2k

1,27022 silver badges2020 bronze badges

$endgroup$

echo ACCTTGAAA | tr ACGTacgt TGCAtgca | rev

share|improve this answer

edited Apr 15 at 14:03

Chris_Rands

1,68944 silver badges1919 bronze badges

answered Apr 15 at 9:46

winni2kwinni2k

1,27022 silver badges2020 bronze badges

edited Apr 15 at 14:03

Chris_Rands

1,68944 silver badges1919 bronze badges

edited Apr 15 at 14:03

Chris_Rands

1,68944 silver badges1919 bronze badges

answered Apr 15 at 9:46

winni2kwinni2k

1,27022 silver badges2020 bronze badges

answered Apr 15 at 9:46

winni2kwinni2k

1,27022 silver badges2020 bronze badges